rs50166340 SNP Detail

Summary

• ID
  rs50166340
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81336147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGAGAAA CCCTGTCTCG
  AAAAACCAAA AAAAAAAAAA AAAAGGAAAA GACAGAATGT CATAAATGTT TGTCACTTGT
  ATACACCAGC CAAGCCTTAA TCAATGTCAT CCAAACACAT CAAGTACCAC CCATGCATAA
  CAGGTGCTTA ATATCTTTTT AGAATTTTTG TTACATTTAT TGATTGACTG TGTGTGTCCT
  K
  TCATGTGCTG GGGTCAGAGG GCAACTCACA GGAGTCCATT CTCCCCTTCT ACCATGTGGG
  TCCTTAGAGC TTTGCCTCAG GCACCTTTAC CCCTGAACTG TTCACTGGTG CTTAATCAGT
  GTTTGCTGTG TGTACACAGA AGGTGCTTAA AAAATGTGTC ACATTGGGTG TAGCAGCACA
  TGCCATTAGT ATCAGTTCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61292393	NES16908709	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50166340					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61292393	NES16908709	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81336147 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1994	CpG island 1994	687 bp distal
Gna15	guanine nucleotide binding protein, alpha 15	1993 bp downstream
Rr435688	regulatory region 435688	891 bp distal
S1pr4	sphingosine-1-phosphate receptor 4	181 bp upstream
Tssr98631	transcription start site region 98631	705 bp upstream
Tssr98632	transcription start site region 98632	670 bp upstream
Tssr98633	transcription start site region 98633	643 bp upstream
Tssr98634	transcription start site region 98634	600 bp upstream