rs50166902 SNP Detail

Summary

• ID
  rs50166902
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29892481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATC GTCCTGACCT GGTCCAATCA
  W
  GAGAATGGTC TGACCCCTCC TTTCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148668592	ENSMUSSNP6785119	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss322132180	CHEV_7_30978075	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50166902					SNP	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29892481 () rs orientation: forward

Symbol	Name	Function Class
Capns1	calpain, small subunit 1	within coordinates
Cpgi18781	CpG island 18781	27 bp distal
Cpgi18782	CpG island 18782	731 bp proximal
Cpgi18783	CpG island 18783	1423 bp proximal
Gm26810	predicted gene, 26810	within coordinates
Rr400232	regulatory region 400232	548 bp upstream
Rr400233	regulatory region 400233	1979 bp upstream
Rr644738	regulatory region 644738	40 bp proximal
Rr644739	regulatory region 644739	1982 bp proximal
Tssr65662	transcription start site region 65662	873 bp upstream
Tssr71696	transcription start site region 71696	126 bp upstream
Tssr71697	transcription start site region 71697	105 bp upstream
Tssr71698	transcription start site region 71698	74 bp upstream
Tssr71699	transcription start site region 71699	42 bp downstream
Tssr71700	transcription start site region 71700	64 bp downstream
Tssr71701	transcription start site region 71701	282 bp downstream
Tssr71702	transcription start site region 71702	738 bp downstream
Tssr71703	transcription start site region 71703	944 bp downstream
Tssr71704	transcription start site region 71704	1038 bp downstream
Tssr71705	transcription start site region 71705	1096 bp downstream
Tssr71706	transcription start site region 71706	1964 bp downstream
Tssr71707	transcription start site region 71707	1976 bp downstream
Tssr71708	transcription start site region 71708	1990 bp downstream