rs50168472 SNP Detail

Summary

• ID
  rs50168472
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:144555937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGAAATTTC AAATTACTGT CATCATTTCA TTTGTGTTTT
  TTGGTCACCA GTCAGGCATT TATTACTATC TTCTTGGAGT TCACTAAAAT TCCTTGAATT
  Y
  TTTGATAATG TTTATGATAA TTCTTGAAAA TTATATATTG TGGGGTTCTT CTAGGTAGGT
  CTCACTAGAG AACACTTTTA TCGGGACAGT GAGTAGCTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147805155	ENSMUSSNP2200683	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50168472					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144555937 () rs orientation: forward

Symbol	Name	Function Class
Dtd1	D-tyrosyl-tRNA deacylase 1	within coordinates
Rr46878	regulatory region 46878	1864 bp proximal
Rr374001	regulatory region 374001	734 bp upstream
Tssr20549	transcription start site region 20549	766 bp upstream
Tssr20550	transcription start site region 20550	828 bp upstream
Tssr26613	transcription start site region 26613	541 bp downstream