rs50169327 SNP Detail

Summary

• ID
  rs50169327
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:56529732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAGCCAAGA GAGACAGGCT GACCTAACTT CCAGCTTCTT
  AAACTGTGGG CCACAACCTC ATACCGGGTC GTATAACTGA GTGTGGGGCT GAGTAGGGGA
  Y
  GGTCAGGAGT AAAAAGGTTT TAAACACACA GCAAGTAAAC CTCCCAGTGT ATAGCGAGCT
  CACCCGATGC AGCGCAGGTG GGCTGACAGG AACGTCTAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss149044663	ENSMUSSNP170405	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss324346618	CHEV_13_56483280	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs50169327					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:56529732 () rs orientation: forward

Symbol	Name	Function Class
Rr272828	regulatory region 272828	1732 bp distal
Rr276642	regulatory region 276642	1669 bp proximal
Rr284344	regulatory region 284344	within coordinates