rs50169558 SNP Detail

Summary

• ID
  rs50169558
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:17814868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTCAGGC TCTTAGACCA
  TGCCTGGGGC AGAGGGGACG GGGTGACGGG CTCTGGGCCG GCGGGGCGTT GAGCGATCGC
  TCCCCGGCTT GCACGGGAGG CGGCGGAGTG GGACTGGAGC CTCCGCCGCG GGCTCTCCCG
  GCTTTGCTCT TGGACTCTTC GTTTGCCTCT TGCTCCTCTC CGGCCCTGGA GCTCCGTGGA
  R
  ACGACCGGCC GGAGCGCAAG CAGCGGCCGG GCGCCCCCTC TGCTGAACCC GGCTCCAAGC
  GCTCGCTCGC TCGCTCGCCC TCTCGCTGCG CTCCCTCCGG CTCCGAGCAG CGCGCCGGGA
  CTGTGAGTGG CGACGGCAGC GGCGCCCGCT CCGCATAAAT GACTCCCCCG CCCCCCGGAG
  CACCCCTCCT TTCCCACATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146130686	ENSMUSSNP5170989	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50169558					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:17814868 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10665	CpG island 10665	1234 bp distal
Cpgi10666	CpG island 10666	within coordinates
Pcsk5	proprotein convertase subtilisin/kexin type 5	within coordinates
Rr544885	regulatory region 544885	within coordinates
Rr544886	regulatory region 544886	72 bp proximal
Rr544887	regulatory region 544887	118 bp proximal
Tssr158513	transcription start site region 158513	116 bp downstream