rs50169635 SNP Detail

Summary

• ID
  rs50169635
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:111858407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCTTCAA GTCCAATCCC
  CCAAGTTTAT CCTCAGCTCA GTGGCAAACT TCCTGCCTTA GTTAGCATTT CCATTGCTAT
  GAAGAGATGC CATGACCAAG GCAACTCTTA TAAAGGACAA CATTTTAACT GGCGTTGGCT
  TATAGTTTCA GAGACTCAGT CCATTATCAT CAAGGCAGGA AGCATGGCAG CATCCAGGCA
  R
  ATATGGTGCT GAAGAAGGAG CTGAGAGTTC TCCATCTTGA TCTGAAGTCA GCAAAGAAAA
  AGAATGACTC ACGAGCAGCT AGGAGGGTCT CAAAGACCAT CCCACAGTGA CATACTTCCT
  TCAACAAGGC CACACCTACT CCAACAAGGC CACACCTCCT AATAGTGCTA CTCCCTGGGC
  CAAAGATATT TAAACACTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss134277701	ENSMUSSNP239801	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss325913340	CHEV_X_110062319	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50169635					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:111858407 () rs orientation: forward

Symbol	Name	Function Class
Rr2637	regulatory region 2637	994 bp proximal
Rr6449	regulatory region 6449	1177 bp proximal