rs50169722 SNP Detail

Summary

• ID
  rs50169722
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30840864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAATGCTCAG TGCCTTTCCT AGCCCTTTTT GATGTCAGGG
  ATGGCTAACT CTTCCAGCTC TGGGCTGACA AACACAAAGG GGAGTCTGCT GTCAGGTCAT
  Y
  CCCTGGTCCT TCCTGTTTCC TGTTAGGACT CCACATTGAC ACAGCTATCT CTCAACCAAG
  CAGATATTGA GGACGAATGC CAGGTGTGGT TCTTGCTGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60989109	NES16134707	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	T	T	C	C		T	C	T	T		C
ss148700702	ENSMUSSNP5877280	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
ss322139660	CHEV_7_31926458	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50169722					SNP	C	C	C	C	C	C	C	T	T	C	C	C	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60989109	NES16134707	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30840864 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18838	CpG island 18838	1248 bp proximal
Gramd1a	GRAM domain containing 1A	within coordinates
Rr645030	regulatory region 645030	1179 bp distal
Rr645031	regulatory region 645031	834 bp distal
Tssr71945	transcription start site region 71945	1188 bp downstream