rs50169848 SNP Detail

Summary

• ID
  rs50169848
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98947029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTCAAACT CAGAAATCCA CCTGCCTCTG CCTCCTGAGT
  GCTGGGATTG AAGGCATGAG CCACCACGCC CGGCAAGACC TAGTATTTTT ATTGATGAGT
  W
  TCTTGCTCTA TATCTGGGCA GATACTGAGC TATTCTAACC CAACTATGCT GGCCTGGCCT
  ACTTCCCTGC CATCTTAGTC TTGCCCTGGC AATTCGTGC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148463858	ENSMUSSNP2784347	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss325079703	CHEV_15_98879579	CHEVERUD	SCREENING_POP	f	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50169848					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98947029 () rs orientation: forward

Symbol	Name	Function Class
D15Jcs28	DNA segment, Chr 15, John C. Schimenti 28	1029 bp distal
Gm41399	predicted gene, 41399	within coordinates
Rr305848	regulatory region 305848	172 bp proximal
Rr311358	regulatory region 311358	1796 bp distal
Rr315589	regulatory region 315589	172 bp proximal