rs50170677 SNP Detail

Summary

• ID
  rs50170677
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135718684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTTC CTCCTCGAGA AGGACATGAA
  Y
  GATGTCAGCG TTGGGGTGAA GTGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss60803569	NES16473420	PERLEGEN	MM_PANEL2	f	SNP		T	T	C	T	T		T		T	T		T
ss145546432	ENSMUSSNP1662929	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T					T
ss319993411	CHEV_1_137687523	CHEVERUD	SCREENING_POP	f	SNP									T			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs50170677					SNP	T	T	T	C	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60803569	NES16473420	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135718684 () rs orientation: forward

Symbol	Name	Function Class
Rr372093	regulatory region 372093	1133 bp upstream
Rr419278	regulatory region 419278	1796 bp distal
Rr419279	regulatory region 419279	1978 bp distal
Rr419280	regulatory region 419280	645 bp distal
Rr419281	regulatory region 419281	920 bp distal
Rr419282	regulatory region 419282	1291 bp proximal
Rr419283	regulatory region 419283	1923 bp proximal
Tnni1	troponin I, skeletal, slow 1	Intron