rs50170913 SNP Detail

Summary

• ID
  rs50170913
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:11504436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTGTTAT CTCCATCTAT
  CCTGACACCA TCTTTCTTCC TGTCTTGATC TCTGCCACCA TCCCTATCTC TGCCACCATC
  TCCTTCTCTG ACATCTTCTC CATCTCTGAC ATCATCTCAC CTCTTCCATC ACCTCCATCT
  CTCCTGTCAT TATGTCTGTC TTCCCAATCT CTTGTCATTT CTCTGTCACC TTTATTACTA
  Y
  CATCCCTATT TCATTTCTTC TTTAGTATAT CTTATTTTTT AATTCTTTAT CATACTTTAG
  CAAAACAAAA ATCATATTTC ATTGCATATA AATTTCCCAA TAAAGAAAAT AAGTTTTAAA
  ATGGCAGCTA AGGTACATGG TCGTTCATTC TTACCTGTGG ATTGGATCAC AATGGTGTTA
  ACTATGGTAT AGGAAACTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52615894	NES15504954	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T	T	T	T	C		C	C	T	T		T
ss324264596	CHEV_13_11581817	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50170913					SNP	T	T	C	T	C	T	T	T	T	C	C	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52615894	NES15504954	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:11504436 () rs orientation: forward

Symbol	Name	Function Class
D13Ertd463e	DNA segment, Chr 13, ERATO Doi 463, expressed	1433 bp distal
Rr387978	regulatory region 387978	235 bp upstream