rs50171141 SNP Detail

Summary

• ID
  rs50171141
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81330915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAACTCA AAGAACTTAT
  GCCCAGGGTT TCTAAAGACC TGCTCTGGCT GGCTGCCCCA TCACGAGTCC TCCAGGGTGT
  AGACAAGATG CAAGAGCCCA TTAGTTCTTA ACCAGCCAAG GATGGGTGAG AAAGTCACGT
  TAGGCATCTG GTCCACAATA CATGAGCTTA TTCACAGACC GGCCCACCCA AGATTCTGTG
  Y
  ATGTGAGACC CAGACATGGA AATGCATGGT CTAGGAACTG CCCTCCAGAT CGCGGAATGC
  TCTGGAACAA CTGTGGGAGC TCAGAAGCTA TGCTTCACAG CTTAGTGGTG TCCACGGTTC
  CCCCGCCATC AGTGACACCC CACAGTGGCA GTTTAGCAGG TGGCCCTTCC GAAGATACCA
  GGCCACAAGG ATCTGCAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61292424	NES16908870	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50171141					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61292424	NES16908870	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81330915 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1993	CpG island 1993	419 bp proximal
Ncln	nicalin	within coordinates
Rr402085	regulatory region 402085	1203 bp upstream
Rr435684	regulatory region 435684	within coordinates
Rr435685	regulatory region 435685	1233 bp distal
Rr435686	regulatory region 435686	1235 bp proximal
Rr435687	regulatory region 435687	1354 bp proximal
Tssr98629	transcription start site region 98629	1232 bp downstream
Tssr98630	transcription start site region 98630	1248 bp downstream