rs50171609 SNP Detail

Summary

• ID
  rs50171609
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102283760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGTACCT TGTGTGCCAC
  CTGAAAGTGT GGGGTCTTTC TTAAATGTGT TCCCAACCAC GGGGCTTCTT GTAGTGCTTA
  TCTGATAAAA GGATTACAGT GCCTTCCATA TGGATCCAGT ACAATATATT AATTCATTAA
  AAAGTTTTTT TTTCTTGCCT CATGCAAGCT TCCCCCTGTC TTTCCCTAGA GAGCAGGGAC
  C
  GTCTCTTATC AAATTTTTAT TTCATATACC AGCTAATATA GTATATTACA TGAAATAAGA
  ACTGGATTCA TTGAATTTAA TTTTTGTCTT TTGATGTAAC TTTTAGGTGT TTTTTTCCCC
  CTGCATTGAG TTTAGTGTGG GCAAACTGTA AGCAAGATCT CCACCTTGTG GGCATAATCA
  GAATATCCTC TAATTAGAGA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147112338	ENSMUSSNP3041024	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs50171609					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102283760 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11976	CpG island 11976	1135 bp distal
Fjx1	four jointed box 1	1623 bp upstream
Rr561696	regulatory region 561696	826 bp distal
Rr561697	regulatory region 561697	28 bp proximal
Rr561698	regulatory region 561698	155 bp proximal
Tssr25397	transcription start site region 25397	1641 bp upstream
Tssr25398	transcription start site region 25398	1600 bp upstream
Tssr25399	transcription start site region 25399	1572 bp upstream