rs50171954 SNP Detail

Summary

• ID
  rs50171954
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152732644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATCTGTTG CTCACTGTGC
  AGTTTGAATG AGATGTCTCC AGGTCTCTGG CATCGAGAAC ACAGTCCCCA GGGGTGGCAA
  TGTTTGAGAG GTTTAAGAGG CATGGCCTTG TTAGTGGAAG CACACCACAC TGGAGAAGAT
  CTCTGTGAGT TCAAACACTC ACAGCATTTT GAGGTCATTT CTCTGTGTTT CTTGCTGGGA
  G
  CTCCCAGCCA CTGCGTCTGC TCTGCCATGG TGGACTCTCA TCCCTCTGGG ACCATAAACC
  CAAATAATAA TTTTTATTTT TATTTATTAT TATTATTATT ATTATTATTA TTATTATTAT
  TATTATTATT TTCGAGACAG GGTTTCTCTA TATAGCCCTG GCTGTCCTGG AACTTATTTT
  GTAGACCAGG CTGACCTCGA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss148084616	ENSMUSSNP6108532	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs50171954					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152732644 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15417	CpG island 15417	951 bp distal
Gm69406	predicted gene, 69406	within coordinates
Rr87959	regulatory region 87959	44 bp distal
Rr93365	regulatory region 93365	644 bp distal
Rr97434	regulatory region 97434	within coordinates