rs50172753 SNP Detail

Summary

• ID
  rs50172753
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:59651960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATTACCACA TATGACAACC ATAAATACTA CCTACCCATA
  AATGTGAAGA AAACAAGATT TTTTTAAAAA AAGCAAGCAC ATAAAAAAAT CATGAAAAAA
  W
  ATTGAAAGTA TGAAACACAG GAGTCACACC TGTGGTTTCA AGCACTGAAG GGAGAAGGTG
  GGGTGGATCA CCAGCTCCAT TGACAGTGGG ATACATATCA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss61014601	NES16116678	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs50172753					SNP	T	T	T	T	T	T	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61014601	NES16116678	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:59651960 () rs orientation: forward

Symbol	Name	Function Class
Del(7Ube3a-Snrpn)1Alb	Deletion, Chr 7, Beaudet 1	within coordinates
Gm38393	predicted gene, 38393	Intron
Gm72353	predicted gene, 72353	1452 bp upstream
Rr647544	regulatory region 647544	962 bp proximal
Rr647545	regulatory region 647545	1463 bp proximal
Snrpn	small nuclear ribonucleoprotein N	Intron
Snurf	SNRPN upstream reading frame	Intron
Tssr66968	transcription start site region 66968	1477 bp upstream
Tssr72702	transcription start site region 72702	771 bp downstream
Tssr72703	transcription start site region 72703	849 bp downstream
Tssr72704	transcription start site region 72704	926 bp downstream
Tssr72705	transcription start site region 72705	952 bp downstream
Tssr72706	transcription start site region 72706	1754 bp downstream