rs50173936 SNP Detail

Summary

• ID
  rs50173936
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:120154272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGACTCTA GACTCCCCAT
  GAGTCTAGAT GTCCCAGGAA GTGTAAGACT CTAGACTCCC CATGAGTCTA GATGTCCCAG
  GAAGCGTAAG ACTCTAGACT CCCCATGAGT CTAGATGTCC CATGAGTCTA GATGTCCCTA
  TGCCCAGGAT TGTGTACCCT GACATTGGCA AGCAAAGTTT GGGTCTCAAC AAGCTCAGAA
  M
  GCCCAAGGTA AAGCAAGCAC AGGGTGAGGG ATCTGATCCT GTCCTTTGCT GGGGAGAGGG
  GGGCTGTCCT CTTGACACAG AGGCTGGAGG ATGGTGTTGT GCATAGGAAG TAGGTCATGG
  AGGCCTGGAG TTGGCCCAGA GTCCTTGACA GCAGCAAGCA GGCCTGTCCT GGAGCATGCA
  CTGATGGGAG CAGAGCCAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60669980	NES16249666	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50173936					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60669980	NES16249666	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:120154272 () rs orientation: forward

Symbol	Name	Function Class
Gm32006	predicted gene, 32006	within coordinates
Gm64145	predicted gene, 64145	192 bp upstream
Rr401165	regulatory region 401165	555 bp upstream
Rr671126	regulatory region 671126	742 bp distal
Rr671127	regulatory region 671127	51 bp proximal
Rr671128	regulatory region 671128	203 bp proximal
Tssr79690	transcription start site region 79690	1602 bp downstream
Tssr79691	transcription start site region 79691	1575 bp downstream
Tssr83121	transcription start site region 83121	940 bp upstream
Tssr83122	transcription start site region 83122	1395 bp downstream
Tssr83123	transcription start site region 83123	1456 bp downstream