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rs50174137 SNP Detail
Summary
  • ID
    rs50174137
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr1:164287661 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          GAGTTTGATG GTTTCTGCCT ATAATCCCAG ACTGGAGATA
    GGCAGGAGGA TTACACATCT GAGGAAGAAA GAAAAGTGAG TAAGAGGACT CTTAAGACTG
    W
    TGCGGTGACC ATTCCTCATA GCCAGTGTAC CTCAAACCCC CAGAACAGTT TGCAAACAGT
    TCATCGTGGC AGGTTTTAAA TCAGAACTTT CTTTACTAT                       
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
ss145978953 ENSMUSSNP247971 ENSEMBL ENSEMBL_Sanger f SNP A A T
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
rs50174137 SNP A A T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:164287661 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Atp1b1 ATPase, Na+/K+ transporting, beta 1 polypeptide 1737 bp upstream
Cpgi945 CpG island 945 1016 bp distal
Gm32391 predicted gene, 32391 within coordinates
Gm70485 predicted gene, 70485 within coordinates
Gm70492 predicted gene, 70492 1346 bp upstream
Tssr9788 transcription start site region 9788 1562 bp downstream
Tssr9789 transcription start site region 9789 1545 bp downstream
Tssr14747 transcription start site region 14747 1729 bp upstream
Tssr14748 transcription start site region 14748 1355 bp upstream
Tssr14749 transcription start site region 14749 747 bp downstream
Tssr14750 transcription start site region 14750 762 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory