rs50174367 SNP Detail

Summary

• ID
  rs50174367
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:54076003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGAATACAG GAATTTGTAC AAACTTGTTC ATTTCTCTAG
  AATGCACTCT GTCTTTCCTC ACATAGGTAG ATAATTTCTT ATGTATCTTC CTTGTTAATG
  K
  GTCCTGAAAG AGGCACAAAT AGTTTAGACA TATTCCAGCC TCACAGTCTC TTATAAACCA
  CAGAAGAGAA TAACTGGTTG CTCCTGTGTG TAGCTACACT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss62787605	NES17356798	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs50174367					SNP	G	G	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62787605	NES17356798	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:54076003 () rs orientation: forward

Symbol	Name	Function Class
Tssr145231	transcription start site region 145231	846 bp upstream
Tssr145232	transcription start site region 145232	854 bp upstream
Tssr145233	transcription start site region 145233	882 bp upstream