rs50175011 SNP Detail

Summary

• ID
  rs50175011
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:90916357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCTAATT TAGAAAATTA
  GAAATAAAGC CTCAAATAAC ACAAAATGTG TTGTGTCACA TAACTGTATT AAGAAGATGC
  TCAAGAGTCG TTCATCAAAG TGTTTGGGAG ACTGATAGCA AGATTCTGGC TTTCTTCCTT
  CATAATTTTA TAAAGTGTTG CCACTTTTCC AATAAACACT TTGGGTTTTT TTATAGTAAA
  W
  TTTTTTACAG TAAAAATTCT CCCTTCTCTT AGGTTGAGGT TCTGTAAAAG TTTTACTGTA
  ATACTCAAGT CCTGGTGCTT TAAAGCGTGT TTCCTTTATC CAACCTATAA ACCAAGTAGC
  GTTGCTGATA CCAGCTTCTC AACATGGACA TCAGCCGCAG ATCTTCACTA GTAAGCACAT
  ATTCACAGAA CCACAGGAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147290149	ENSMUSSNP2858253	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
ss323387252	CHEV_10_90543240	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50175011					SNP	T	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:90916357 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Apaf1	apoptotic peptidase activating factor 1			Intron
				Noncoding-Transcript-Variant
Rr436975	regulatory region 436975			710 bp distal
Rr436976	regulatory region 436976			1240 bp proximal
Rr436977	regulatory region 436977			1924 bp proximal
Tssr95222	transcription start site region 95222			1596 bp upstream