rs50175642 SNP Detail

Summary

• ID
  rs50175642
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148370787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACTCCAG CAAAGGAAAG
  TCAGGAAAAG GAACGAAGGC GGCCAGAAAG GATGATGGAC GGGAAAGAGC AAAGGGTGTG
  CATTTGAAAG ATAACCCTGG GAAGGAGAAC AGCCAGCAAA GAGCACTAGC AAAGATTGCA
  GACCCTGGAG GCAGAAGATA TGCCAGGAAG AGGTCTGAGT GGTCATGGGG GCGAAGAGTC
  Y
  GAAATGGACA CTGAGCTTCA AACCAAGACT GTAAGGCGCC TGCCTGCCTG CCTGCCTGCC
  TGGCTGGGCT GCTGCCCGGA GCTTCCCTTG AGCCTAACAG CTGCTTCTCT CCTTTTGGCA
  GATACTCTGA TTCGGGGAGG TCTGCAGTAG AAGAGGAGGG GGCTGATTGA GCCTGTGTGT
  TTGTGTGTGT GCACGCCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148000172	ENSMUSSNP3591984	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50175642					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148370787 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15301	CpG island 15301	390 bp proximal
Disp3	dispatched RND transporter family member 3	within coordinates
Gm68159	predicted gene, 68159	1937 bp upstream
Rr604638	regulatory region 604638	1448 bp distal
Rr604639	regulatory region 604639	within coordinates
Rr604640	regulatory region 604640	1625 bp proximal
Rr604641	regulatory region 604641	1824 bp proximal
Rr604642	regulatory region 604642	1948 bp proximal
Rr604643	regulatory region 604643	1967 bp proximal
Tssr44603	transcription start site region 44603	1597 bp downstream