rs50175935 SNP Detail

Summary

• ID
  rs50175935
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128535555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGT GAATACTAAA ACTACTTAGT
  Y
  TGAGGTAGAG GGATGTCAAT CACGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ
ss60796456	NES16465401	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ
rs50175935					SNP	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60796456	NES16465401	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128535555 () rs orientation: forward

Symbol	Name	Function Class
Rr366987	regulatory region 366987	1759 bp downstream
Rr396265	regulatory region 396265	1504 bp downstream
Rr417790	regulatory region 417790	1509 bp distal
Rr417791	regulatory region 417791	152 bp proximal
Tssr13482	transcription start site region 13482	156 bp downstream