rs50176599 SNP Detail

Summary

• ID
  rs50176599
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:22701529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCTCTAC TACACTAAAA
  TCCTATCATT TTGCTCACTG AGGCAGAAGG ATCCCAAGTT CAAGGCTAGA TAGACAACAC
  AGTAATACTC TTGTACTCCT GAATCCAATG TCTGATTTAC CAAAAATCCA AAAGATTTTA
  AATGTAACTT GTTAAACGTT ATATTTACAA CTGTATATTT CCAGCAGAAT TTTGATGAGG
  W
  CATCATCTGA GAAGCCACAT AGAGAGTAGT AGGGGCAGGG GAAGAGAGAG CAGGGAAAAG
  GCAGGGACAG GGGTCAAAGG GGTGTGCTGT CGGTCTGAGT TATTTCCTCT TGGGTGAGTA
  ACTTGCTCTC TCTCATTCGT TACCCAGTGT GCATCAGTAG TGTATGCAGA CTGAGAAACC
  AGAGTCTCAG CCTAAAGGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146366005	ENSMUSSNP2721651	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50176599					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:22701529 () rs orientation: forward

Symbol	Name	Function Class
Apbb1ip	amyloid beta precursor protein binding family B member 1 interacting protein	within coordinates
Rr48489	regulatory region 48489	129 bp distal
Rr48490	regulatory region 48490	72 bp proximal
Rr372905	regulatory region 372905	within coordinates