rs50177982 SNP Detail

Summary

• ID
  rs50177982
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99307454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAA GGGCAGCCTG GTCTACAGAG
  Y
  GAGTTCCTGA ACAGCCAGGG CTACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132709380	ENSMUSSNP4724890	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50177982					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99307454 () rs orientation: forward

Symbol	Name	Function Class
A830036E02Rik	RIKEN cDNA A830036E02 gene	615 bp upstream
Cpgi3798	CpG island 3798	1289 bp proximal
Krt12	keratin 12	within coordinates
Tssr104877	transcription start site region 104877	513 bp upstream
Tssr104878	transcription start site region 104878	594 bp upstream
Tssr104879	transcription start site region 104879	647 bp upstream
Tssr110665	transcription start site region 110665	341 bp downstream
Tssr110666	transcription start site region 110666	1762 bp downstream
Tssr110667	transcription start site region 110667	1800 bp downstream