rs50178739 SNP Detail

Summary

• ID
  rs50178739
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116387143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGATGCAA CAGGATGGCC
  CAATTATTAA ATCCAGAGGC CAGTGGTTAG GTGTGATTCT CAGCTCTTTC TATTAGCTGC
  TAACTCTATA ATCCTGACTG CTTCATGTAA ATAATAGTAT AGACTTTCTA TATTAAGTAT
  AGACTTACTA TATTATTAAG TAGAATAATA GTATGACTTG CTTCCTAAGG TTTGTGAAAA
  W
  TGAATTTTTA AAAGCAAAAT AACGTTTAGT ACTAGCCCTA CAGCCAAAGC TGACCAAGTA
  TTTACTCTTA ATTTTTCTCA ATTGTTTATT TCAATTTATT TCAGAATGTT CATGAAGATA
  CGCACACTGA ATTTTAGAGA AAGTTAAGGA ATTTTCAGTA TTAAAAAAAA CAACATTATT
  TCATGTATAG ACTTTTAAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	SM/J
ss60436762	NES15940898	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T		A
ss320895790	CHEV_3_116296412	CHEVERUD	SCREENING_POP	f	SNP						T		A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	SM/J
rs50178739					SNP	T	T	T	T	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60436762	NES15940898	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116387143 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13737	CpG island 13737	982 bp proximal
Rr397965	regulatory region 397965	1269 bp upstream
Rr583746	regulatory region 583746	956 bp proximal
Rr583747	regulatory region 583747	1253 bp proximal
Rr583748	regulatory region 583748	1334 bp proximal
Rr583749	regulatory region 583749	1527 bp proximal
Rr583750	regulatory region 583750	1695 bp proximal
Sass6	SAS-6 centriolar assembly protein	1488 bp upstream
Trmt13	tRNA methyltransferase 13	within coordinates
Tssr31360	transcription start site region 31360	1465 bp upstream
Tssr35316	transcription start site region 35316	1322 bp downstream
Tssr35317	transcription start site region 35317	1354 bp downstream