rs50178874 SNP Detail

Summary

• ID
  rs50178874
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:161323118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAT ATAGTTGTGG TTTATGAGGG
  S
  AATAACTTTG GGCTTGGGTG ACCAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145915206	ENSMUSSNP7157716	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50178874					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161323118 () rs orientation: forward

Symbol	Name	Function Class
Rr421810	regulatory region 421810	884 bp distal
Tnfsf18	tumor necrosis factor (ligand) superfamily, member 18	Intron
Tssr9690	transcription start site region 9690	893 bp downstream