rs50181303 SNP Detail

Summary

• ID
  rs50181303
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:106094160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAACAAG ATAGGTTCGC
  AGTGGCTGCA CATAGAAACT TCTTTCTACT TTTACAGTGA TGCAAAACAG ATAATGGAGG
  CTTCGCAGTC CAGTTTTCAG TTAGTGTGTA AGTAGGCACA ATGAAATCTC ATCATTTAAT
  ACCTACTGCT ACGGAGGACA GGCATTCCCA GATTCATCAC AAAGTCACCA AGGCTGACTG
  R
  CACACGAGTC GTTGTACTCT CAAAACCTTT CCACTCTCTG AGATGTTAAA GGCTAGTCAT
  AACTAATGGA CTCTTGTCAT GTTTCCCTCT GTTCCTTCTA TAGCACACAT TGGAGTATAG
  ATAAGAGCAT GCAAGGGAAG AAAACATACA TACATACATA CATACATACA TACACATACA
  CACACAAAAT ATTTTGTTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62559012	NES17102187	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	G	G	G	G		G	G	G	G
ss146767803	ENSMUSSNP2921546	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50181303					SNP	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62559012	NES17102187	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:106094160 () rs orientation: forward

Symbol	Name	Function Class
Gm48970	predicted gene, 48970	within coordinates
Gm63380	predicted gene, 63380	911 bp downstream
Rr390111	regulatory region 390111	1490 bp upstream