rs50183574 SNP Detail

Summary

• ID
  rs50183574
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:76375209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATTCAGG CTACGTCAGA
  GTCCAGGGAG AGGCAGACGA TTTGGAGATA AAAGCCCAGA CCCAGCCAGA TGACCAGGCA
  ATCCAGGCTG GGTCTACCCA GGGCCTACAG GAAGGTGTGT TGGTGAGAGA TGGTAAGAAG
  AGCCAAGAAT CACACATAAG CAACAGCGTC ACCTCGGGAG AGAATGTGAT CGCCATAGAA
  Y
  TGGAATTAGA AAACAAATCT TCTGCTATCC AGATGGGAAC TCCTGAGCTG GAAAAGGAGA
  CTAAGGTGAT CACGGAAAAG CCAAGTGTGC AGACGCAGCG AGCAAGTCTA CTTGAGAGTT
  CAGCAGCAGG CAGCCCTCGG TCAGTGACTT CTGCTGCTCC TCCATCACCA GCAACCACAC
  ATCAACATAG TCTGGAAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61648303	NES17599469	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	C	C	C	C	C		C	T	T	C		C
ss324105020	CHEV_12_77429422	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50183574					SNP	T	C	C	C	T	C	C	C	C	C	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61648303	NES17599469	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76375209 () rs orientation: forward

Symbol	Name	Function Class
Akap5	A kinase anchor protein 5	Coding-Synonymous
Tssr113950	transcription start site region 113950	494 bp upstream
Tssr113951	transcription start site region 113951	622 bp upstream
Tssr113952	transcription start site region 113952	839 bp upstream