rs50184844 SNP Detail

Summary

• ID
  rs50184844
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148516354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGAATCTCC CTGAGACTGT
  TTGAATGCTA GAGCCTTTCT GCTATGGTGT CATGGCCCTG CTGGTCTTAA ATGGTGGCCA
  TTAATGCTGA AGACATAAAT TCTAGTTAGT CTTGGGTTTA CTTGTTATGG GCATTGTAAC
  CACTGTCCTC CACTCTCCTG AGAAATATGC CATTCCCTGC ATCTTCTGGG TCCTTGTTGG
  A
  TTATTTCATG GTAGTCTTTT CCCATACAGG CACCTGCTCT CCTTTGTTGG GTCAGTAACC
  ACTCACTTCT ACAGCGGGAG ACACAGGTTT TACTAAGATG AGCCACACCC TGGTTGCCTA
  GGGGCAGTCA CACCTATCCA CGCTTTTAGG AAAGCAGACT TCAGGTATCA AATGTACTTT
  AATAATTATA AATGGATTTT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147930985	ENSMUSSNP2313355	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50184844					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148516354 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12399	CpG island 12399	1366 bp distal
Gm75182	predicted gene, 75182	163 bp downstream
Nxt1	NTF2-related export protein 1	within coordinates
Rr397374	regulatory region 397374	1746 bp downstream
Rr566945	regulatory region 566945	1798 bp distal
Rr566946	regulatory region 566946	1928 bp distal
Rr566947	regulatory region 566947	587 bp distal
Tssr20647	transcription start site region 20647	1712 bp downstream