rs50184865 SNP Detail

Summary

• ID
  rs50184865
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165590361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATGT AGCAGAAGAT AGCCTAGTCG
  K
  CCATCATTGG GAAGAAAGGC CCCTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146006530	ENSMUSSNP4987161	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50184865					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165590361 () rs orientation: forward

Symbol	Name	Function Class
Cpgi955	CpG island 955	765 bp proximal
Creg1	cellular repressor of E1A-stimulated genes 1	966 bp upstream
Rr13809	regulatory region 13809	761 bp distal
Rr28876	regulatory region 28876	239 bp proximal
Rr396502	regulatory region 396502	746 bp upstream
Tssr9817	transcription start site region 9817	960 bp upstream