rs50185387 SNP Detail

Summary

• ID
  rs50185387
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:82514930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGCTGCA CCCAAAGCCT
  TAGCTTGCCA GAGGACTAGC CTACTCCTAA GGAACAGCTA GGAGCAGACT TGAGTAATCT
  CAACTAGGCC AAAAGACAGT GAATGAGATC CATGGTGACC TTGGTGATGA GTGCCTCCTG
  GTGTCACTGT GTCCCCTCTG AGAAGCATGT TGTCCAAAGA GAGAAGGAAC AGCCACTTCC
  R
  GTGTGAATGC CTGTCAACTT CTAACTGTGC CTAGCCACTC TGTCTCCACA GTTTGTGTGC
  TGTTGAAGGC TGAGCATCAC TTAAAGGTTC AGGGCTGACC ATTGTGTCAC GTTAGGGACA
  ATCTCACCCT GACCTACTTT GGCACTTTAG CCCTGCTTTT GGATTATCCT GTAGAACAGC
  GGTGGAAAGG ACCCTCATCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61656693	NES17599876	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50185387					SNP	A	A	A	G	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61656693	NES17599876	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:82514930 () rs orientation: forward

Symbol	Name	Function Class
Gm61154	predicted gene, 61154	within coordinates
Rr387523	regulatory region 387523	1078 bp downstream
Rr469294	regulatory region 469294	198 bp distal
Rr469295	regulatory region 469295	52 bp distal
Rr469296	regulatory region 469296	314 bp proximal
Rr469297	regulatory region 469297	1396 bp proximal
Rr469298	regulatory region 469298	1955 bp proximal