rs50186330 SNP Detail

Summary

• ID
  rs50186330
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:52519891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGTGGCT GTAGGTGGTA
  GGTGGCTGAG GGTGGCTGGC AGCCATGGGC AGTGGGTAGT ACCTGACACT CTATAAGCTC
  ATTTGTTGAG GACAGCTACT GCCAACAGCA GATAAAAAGT TCAGGGCTGA ACTGGCTTCT
  AGGGGACGCC ACCTGAAGGA GGTTCACTGA GCTCCAGGAG GCACGCAGAG AACAGGTTAC
  Y
  GAACAAACTT CCCACCTGCC AGGCCTGGCG ACTGGAGGTG TCAGGGGCCA TTCTGTCTCT
  AGCTGTACCA CTGATGCTCG GTTATCTTCC TAAGTGTGTG AACCACATGG GGCAGAAACT
  TGTGCAGCTT GGAGACTCTG GTGTGTGGTG TGGTAGGGGG CAGGTACCCA ATAACCATTT
  GTCAAAGGAA TTCAGGGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148439986	ENSMUSSNP2767337	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50186330					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:52519891 () rs orientation: forward

Symbol	Name	Function Class
Rr611419	regulatory region 611419	1346 bp distal
Rr611420	regulatory region 611420	837 bp proximal
Rr611421	regulatory region 611421	1253 bp proximal
Sod3	superoxide dismutase 3, extracellular	1255 bp upstream
Tssr46168	transcription start site region 46168	1363 bp upstream
Tssr46169	transcription start site region 46169	1376 bp upstream
Tssr46170	transcription start site region 46170	1407 bp upstream