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rs50187998 SNP Detail
Summary
  • ID
    rs50187998
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr1:171809783 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TTGAC TTGGTGTCAG TTTAGCAGAC
    M
    GTATGAAGGG GGAACTTGAG GCCTC                                      
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
LG/J
MSM/Ms
SM/J
ss120005070 PARCsnp_1.16612 PARC_SEQ INBRED f SNP C A
ss120007722 PARCsnp_1.06128 PARC_SEQ INBRED f SNP C A
ss146179275 ENSMUSSNP1325306 ENSEMBL ENSEMBL_Sanger f SNP A A A C
ss320121984 CHEV_1_173912347 CHEVERUD SCREENING_POP f SNP A A
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
LG/J
MSM/Ms
SM/J
rs50187998 SNP A A C A A C A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:171809783 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr396575 regulatory region 396575 55 bp upstream
Rr423419 regulatory region 423419 1312 bp distal
Rr423420 regulatory region 423420 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory