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rs50188842 SNP Detail
Summary
  • ID
    rs50188842
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr14:76128080 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          AAAAT AAATTACAAA AAAAAAAAAA
    R
    AAAGAAAGAA AAAAAGAAAA AAGGT                                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
ss139752776 ENSMUSSNP5373510 ENSEMBL ENSEMBL_Sanger f SNP A G G
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
rs50188842 SNP A G G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr14:76128080 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm52138 predicted gene, 52138 1676 bp upstream
Gm62917 predicted gene, 62917 within coordinates
Rr296309 regulatory region 296309 1436 bp proximal
Rr300347 regulatory region 300347 1955 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory