rs50189028 SNP Detail

Summary

• ID
  rs50189028
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165469926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTCAGAA TAGTTTCACT
  GGGATCTTTG GATGAGATGC GTGAGAAAAA TGAAACAACT TTAATTTTCA ATATGTAAAT
  TTTTTTCACG AAAAGAAAAA AAAAAGTAAA ACCAGGGCTC GTCCGGGATT TGAACCCGGG
  ACCTCTCGCA CCCGAAGCGA GAATCATACC CCTAGACCAA CGAGCCGCTC TCGGTGACGA
  Y
  GCTCTCAGGG CCTCCCTTAA GGCTTCCGCG GGGCTGACCT GGTCCGGAAA CCATCTCGCG
  CGAACAGTTC TTTTGGTTCC GAGGCTCTGG GGCCCGGAAC CCCTTCCCGC CGGGCCGAAG
  AAGGCCGGGA GGACGCGCCT TTGCCCAGAG GACGGCTCTG GAGCCGGATT GCGGGTGCCG
  CCCGCTCACA GCGGAACCGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146004016	ENSMUSSNP3996987	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50189028					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165469926 () rs orientation: forward

Symbol	Name	Function Class
Cpgi953	CpG island 953	within coordinates
Gm18407	predicted gene, 18407	1542 bp downstream
n-TPagg2	nuclear encoded tRNA proline 2 (anticodon AGG)	652 bp downstream
n-TPcgg2	nuclear encoded tRNA proline 2 (anticodon CGG)	15 bp upstream
Rr396497	regulatory region 396497	678 bp downstream
Rr396498	regulatory region 396498	within coordinates