rs50189039 SNP Detail

Summary

• ID
  rs50189039
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124221912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGATCCAT GCTTTTCTGG
  ATCACAATGC TGTCAATGGC CCGGCCAGTG TAGTAGGGCA GGAAGGTCTC ACCTGTTGGG
  GGGAGACAGG CAGGCTCAGC AGAGTGGGAA GCCCCCAGCC CCCGTCTCTG CTCACCCAAT
  CCAAGGTCTG GTCTTCAAGT GCCTGCTTGC CCCTGCTGTG GTCAAACTGT CAATTGGATG
  S
  GACTTAGCCA TCATGGAAAC AAACCCCTGG GCAGGGCTGG AGGGAGTTTC TAGACGGGTG
  GTGGGAAGAT ACATGATAAA TGAGGGCTAC AGTACTCCCT GGGCAGGGGT CCTTGACCGG
  ATAAAATGAG GTGAGCAAGC GTAGCACCAG CGCTCATCTC TGCTTCACAT GGATAGATGC
  CATGTGACCT TCGGCATCGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60835696	NES16008726	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50189039					SNP	C	C	C	C	C	C	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60835696	NES16008726	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124221912 () rs orientation: forward

Symbol	Name	Function Class
Abcb9	ATP-binding cassette, sub-family B member 9	within coordinates
Rr109253	regulatory region 109253	1912 bp distal
Rr109254	regulatory region 109254	1112 bp distal
Rr109255	regulatory region 109255	489 bp proximal
Tssr53310	transcription start site region 53310	720 bp upstream
Tssr53311	transcription start site region 53311	362 bp upstream