rs50189157 SNP Detail

Summary

• ID
  rs50189157
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46039805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCTCAGG AGACAGTTAT
  GCTAGGCTCC TGTCTGCAAG CACAGCAGAG GATCATTAAT AGCGTCAGGG TTGGCTCTCT
  CCCATGGGAT GGGTCTCATC TTGGACCAGT CATTGGTTGG CTGTTCCCTC GGTCTCTGCT
  CCATCTTTAT CCCTGCACAT CTTGTAGGCA GACAGATTTT GGGTGGAAGG TTTTGTGGGT
  G
  GATTGATGTC CTTCTTCTTC CACTGGATGT CCTGTCTGGC TATAGGAGGT GGCTACTTCA
  GTCTTTATAT CTCCAGTTGC TAGGATTCTT AGCTGGCATT ACTCCTATAG ACTCTCAGGA
  GGCTTCCCAC TTTTAAAGTG AACATTATTT TTTAATTAAT AGCTATGTGA TGTGGTGGTG
  GTGGGTGAAT TTGTAGGCTA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136423361	ENSMUSSNP77540	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50189157					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46039805 () rs orientation: forward

Symbol	Name	Function Class
Rr678056	regulatory region 678056	1781 bp distal
Rr678057	regulatory region 678057	823 bp distal
Sik3	SIK family kinase 3	within coordinates
Tssr84829	transcription start site region 84829	1270 bp downstream