rs50189593 SNP Detail

Summary

• ID
  rs50189593
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41115943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGC ACCAGACCAA CCTGAACATC
  A
  TAACAGTGGA AGTACTGGAT GGGGG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136348390	ENSMUSSNP1752452	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss322923628	CHEV_9_41012730	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50189593					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41115943 () rs orientation: forward

Symbol	Name	Function Class
1700063D05Rik	RIKEN cDNA 1700063D05 gene	1508 bp upstream
Gm68881	predicted gene, 68881	804 bp downstream
Rr194790	regulatory region 194790	58 bp proximal
Rr194791	regulatory region 194791	658 bp proximal
Rr383259	regulatory region 383259	1870 bp upstream
Tssr2832	transcription start site region 2832	1539 bp upstream
Tssr84492	transcription start site region 84492	1505 bp upstream