rs50189638 SNP Detail

Summary

• ID
  rs50189638
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99759662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGACAGGC CGAAATGCCC
  ACGGCGCAGT CGGCTACCAG AAGCTGCGAG TGGGGGTAGG TGGGCGGCAA GAAGGGAGGG
  CCTTTTTTTT TAATGTAGTG TGTTGTGTTT GAAGGAGAGA ATTTATTTCC GCTTCCTATG
  ATTGCAAAAA CGTGGGGGCG GGGGGGGGGC GGGAAATCGG TCAGCTTTAG GGCTGTTCTT
  M
  ACAGTGTTGG ATGTTATTCC CATTTCACAG ATGAGGAATA ATTTCCGGGA GAACTGATCT
  TCATTCTGAT TTATTTAGAG GCAGCTGGAG CCCCTACTTT CTGAGAAAAC TTTCACCTCT
  ACCTGGGGAG GCTACCTTCC TATTGTAAAG CAGATACACA ACATTTGAAT TCCTCCAAAG
  GTGGCCCTTC ACTCTCAGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136852135	ENSMUSSNP2619249	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss323137465	CHEV_9_99778028	CHEVERUD	SCREENING_POP	f	SNP		A	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50189638					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99759662 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22205	CpG island 22205	1139 bp distal
Gm16004	predicted gene 16004	within coordinates
Gm67910	predicted gene, 67910	885 bp downstream
Rr685463	regulatory region 685463	1881 bp distal
Rr685464	regulatory region 685464	1450 bp distal
Rr685465	regulatory region 685465	949 bp distal
Rr685466	regulatory region 685466	174 bp proximal
Sox14	SRY (sex determining region Y)-box 14	1439 bp upstream
Tssr91083	transcription start site region 91083	1416 bp upstream
Tssr91084	transcription start site region 91084	1397 bp upstream