rs50190302 SNP Detail

Summary

• ID
  rs50190302
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43449308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCACTTTGG GTTTTTTTAA
  ATTATATCTA TTTATTTGTG TATATGTGTA TGTATGAGCA CGTGCACATA TGCATGCCCC
  AGAATACATG CAAAGGTCGG AGGACAGTCT GTAGGGATCA GTTGTTGCCT CCCACTCTTC
  TGCTCCTGGG GGCTAGAACC CAGGTTGTGA GCTTGGCAGC AAGCACCTTC AGACCCTGCT
  Y
  TTTCCCACGC TCTAGGGCCC AGACCCGTCA TCACCCAGCC TCCATGATCC AAGAGGGCCC
  AAACTCCTTT CTTATTCGTG AGCCAAACAT TAGTCCCTTT GGGGTGTTGG CATGTCTAGA
  ATGTTCCTCA GCTTGTAACT TCATAGTGAG AACAAGTGGG ACTCAGCTCA GAAAAACAAT
  GGGGCCCTCC AGGCATTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61001484	NES16126124	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50190302					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61001484	NES16126124	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43449308 () rs orientation: forward

Symbol	Name	Function Class
Klk8	kallikrein related-peptidase 8	within coordinates
Rr646024	regulatory region 646024	1567 bp distal
Tssr66053	transcription start site region 66053	1788 bp downstream