rs50191333 SNP Detail

Summary

• ID
  rs50191333
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152948512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAACGGTAT ATACCCCAAT
  ACCCAGTCTA GCAAAAATAC TTCTAATTAT GCCACAATAA ATGTCATAGG AACTTTGGGA
  ACATGAATGT GGGTTTTTGT GGCAATACTA GTCTGGCGAA AGCTTTTGGG AAATGGTTTG
  AAAAAAGGAA GGTGTTGGTT CTTTGTGGTT CCCTGCCATC AAATGGCACA TTGTTAACCG
  M
  GATGTTAGGG ATGCTGGTTA TATCCTTCTA ATTTCCCCCT GGGCCTGTCC CAGGACCTAC
  CTCCCTCATC CTGGAGGCCC AGGAAGCATG GTTGGGGCAG ACCAGAGTGC TGGAGGCCTA
  AGGCCCTCCG GGCATCCCTC ACCAACCATC CCACAGGAGT GTTTAAATGC CAGGCCTTTG
  TCTCTAGGTG GATAATCGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147984167	ENSMUSSNP1449918	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50191333					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152948512 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12479	CpG island 12479	1853 bp proximal
Hck	hemopoietic cell kinase	1876 bp upstream
Rr567550	regulatory region 567550	774 bp proximal
Rr567551	regulatory region 567551	1599 bp proximal
Rr567552	regulatory region 567552	1915 bp proximal
Tssr20863	transcription start site region 20863	1064 bp upstream
Tssr20864	transcription start site region 20864	1110 bp upstream
Tssr20865	transcription start site region 20865	1882 bp upstream
Tssr20866	transcription start site region 20866	1897 bp upstream