rs50191960 SNP Detail

Summary

• ID
  rs50191960
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51361005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCTCTTT TCTGGATGTT
  TGTTATCTGT CTGTTGCTTA GCATCAGATG CCTAATGTCT CAGAAAGGAC ACATGAGTCA
  ATGAGCCCTA ACACCACCAC AACCAACACC ACCACCATCA GCACCACTCC CCAATCCACC
  TGTACTCATT CACCCTGTTA TCCACAGATA ATTTCTTTTG TATAAGTTTG AGGATGATTT
  K
  ATTAGGGTTT AAAGAAAAAT GTAGCACAGG CAATCCGTTA ATCTTAGCAG CTGCCAGGTG
  GAGAAAGAGA AAAGGAAGAA ACAAAATTAG GGGGAAATCA CATTGTTTGA GTAGAGCTAG
  GATGAAGAGA AACTATGTGA TAGGAAGAAC CAACAAAGCA GGGAGATGAG ATTTAAAGAA
  AGAGTGAGGA ATCACAAAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52289031	NES15304945	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50191960					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52289031	NES15304945	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51361005 () rs orientation: forward

Symbol	Name	Function Class
Gm40645	predicted gene, 40645	within coordinates
Gm49339	predicted gene, 49339	within coordinates
Lilrb4b	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	within coordinates
Tssr93245	transcription start site region 93245	1489 bp downstream
Tssr93246	transcription start site region 93246	1304 bp downstream
Tssr93247	transcription start site region 93247	1261 bp downstream
Tssr93248	transcription start site region 93248	1220 bp downstream
Tssr93249	transcription start site region 93249	1054 bp downstream
Tssr93250	transcription start site region 93250	593 bp downstream
Tssr93251	transcription start site region 93251	532 bp downstream
Tssr93252	transcription start site region 93252	437 bp downstream
Tssr93253	transcription start site region 93253	241 bp downstream
Tssr93254	transcription start site region 93254	108 bp downstream
Tssr93255	transcription start site region 93255	91 bp upstream
Tssr93256	transcription start site region 93256	203 bp upstream
Tssr93257	transcription start site region 93257	566 bp upstream
Tssr93258	transcription start site region 93258	801 bp upstream
Tssr93259	transcription start site region 93259	843 bp upstream
Tssr97554	transcription start site region 97554	840 bp downstream
Tssr97555	transcription start site region 97555	1402 bp downstream