rs50192957 SNP Detail

Summary

• ID
  rs50192957
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:158525617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTGTGTC CCTCTAGTGT
  ACCCACTGAA GAAAACCTCA CCTGGGGGCA CCTAACAAAA AAGGAATGCA AGCTTGCTTG
  CAGCATTTCA AAAGCTGCTC ACAGAGTTCC AAAGAAGGAA TGACACAGTA GCTTACTAAC
  AGCTAAGCAA CGTGAAGACT ACACAGGAGT CTTACCTTAG AAGGTACTTG GTGCAATGCC
  R
  GAAGCATGTC ACGTGCTCAA CAGTGTGGTG TTCTGGCGCC CTCTTCAAAC CTATTCATAA
  TTTCCTAAAT GTCATCCCGT GACAACATGG TTGGGCTGAA GAAATCATGT TCCAATTTCA
  CATCATGTAT CTTTTTTTAT TTTAAATATG GCAAAGGTCT TGTTCAAATT TTTATATTGA
  ACTTCCTTGA AGACGTTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60333202	NES15837273	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50192957					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60333202	NES15837273	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:158525617 () rs orientation: forward

Symbol	Name	Function Class
Gm53639	predicted gene, 53639	1416 bp upstream
Rr421480	regulatory region 421480	383 bp distal
Rr421481	regulatory region 421481	1232 bp proximal