rs50193104 SNP Detail

Summary

• ID
  rs50193104
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122582730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAACTGG CTCAGCAGTA
  AGAGCGCTGC CTGCTCTTGT GCAGGACCCA CTTGAGCATC CACATGGAGG AGACGCATGA
  TCACCTGTAA CTTCAGGGGA TCTGACTCCC TCTTCTGGCC GCCACGGGTT CCTGCATGTA
  CACCGTGCAC TTACACAAGC ACCCACACAT AAAACAAACA AGTGAACATT TTTAAAGCTC
  R
  CGTAAATTTT TCTATGTTAT ATTTTCTCAA AATAATTTTA AAATCTTAAG ATATACAATT
  GGATATAATA TGGTACAGGG CAGGCCTTTA ATTCTAGGAT TCAGGAAGCA GAGGCAGTTT
  GATCTCTTGT GCGTTTGAGG TTAGCCTGGT CTACATAGTT ATAGGACAGC CTGGTATAGA
  GACCATGTTT CCTGTTTCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60938744	NES16186251	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50193104					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60938744	NES16186251	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122582730 () rs orientation: forward

Symbol	Name	Function Class
Gdf3	growth differentiation factor 3	within coordinates
Rr380021	regulatory region 380021	949 bp upstream
Rr399900	regulatory region 399900	1360 bp downstream
Tssr62927	transcription start site region 62927	1358 bp upstream
Tssr62928	transcription start site region 62928	775 bp downstream