rs50193571 SNP Detail

Summary

• ID
  rs50193571
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48745618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TTCCATGGCC TCTGCATCAG CTCCTCCTGC CTGCAGGTTC
  CTGCCCTGTT TGAGTTCTTG TCTTCCTTCA GAGATGAACA GTGCTGTGCA AGTGTAAACC
  S
  AATAAACCCT TTCCTCCACA ACTTGCTATT TGGTCATGGT GTTTCTTCGA AGCAAACAGT
  AACCCTAACT GAGACAGCGA ATCTATCAGT TTATGGGGAT T                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss132111688	ENSMUSSNP4766303	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50193571					SNP	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48745618 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2785	CpG island 2785	1299 bp distal
Cpgi2786	CpG island 2786	569 bp distal
Cpgi2787	CpG island 2787	532 bp proximal
Gm16170	predicted gene 16170	1298 bp upstream
Gm73211	predicted gene, 73211	within coordinates
n-TPtgg4	nuclear encoded tRNA proline 4 (anticodon TGG)	1489 bp upstream
n-TTtgt2	nuclear encoded tRNA threonine 2 (anticodon TGT)	1100 bp downstream
n-TVaac7	nuclear encoded tRNA valine 7 (anticodon AAC)	1846 bp upstream
Rr402520	regulatory region 402520	1240 bp downstream
Rr402521	regulatory region 402521	1983 bp upstream
Rr446140	regulatory region 446140	1309 bp distal
Rr446141	regulatory region 446141	1583 bp distal
Rr446142	regulatory region 446142	808 bp distal
Rr446143	regulatory region 446143	1119 bp distal