rs50194077 SNP Detail

Summary

• ID
  rs50194077
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:74512997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCAGTGT ACTCATATAC
  ATAAATAAAC AAATCTAAAA ATAAATGTGA TATGTATTTC CAGTGACACT CAGTTGGAGA
  AAACTAATTT TAAAAGGGTG GGGAGAGATG GGCTAGTGAA GGTGATGCTG CAAATAAATG
  CAGGTACCTA TAGGTACCTA TAGGCTGTGG GTTCACAGCC CTAGCATAGG TAGGTATTGA
  R
  TGGTTAAATC CTGCACTTTC ATCATCCCTA TCACCTGGAA TGGGCAGCTC ATAGGTTCCC
  GTGGTGCCAG CTTTATAGGA GAGTCATAAT AGAGAAAGAG AGAGGTAAGA GGCACAGTGG
  CCATTCCAGG AAAGTGTCCT GTCCTCAGGT GTACCCCAGT TTTCCTGTGT GACTTTTTTC
  CCTCCTAATA CAGAGCTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61846844	NES17778920	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50194077					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61846844	NES17778920	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:74512997 () rs orientation: forward

Symbol	Name	Function Class
Ccdc127	coiled-coil domain containing 127	within coordinates
Lrrc14b	leucine rich repeat containing 14B	878 bp upstream
Rr482679	regulatory region 482679	593 bp distal
Tssr123216	transcription start site region 123216	951 bp upstream
Tssr123217	transcription start site region 123217	930 bp upstream
Tssr123218	transcription start site region 123218	892 bp upstream
Tssr123219	transcription start site region 123219	868 bp upstream