rs50196184 SNP Detail

Summary

• ID
  rs50196184
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:105514378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGGAGTGA ATCAGCTTGG
  TGGTGTCTTT GTCAACGGGC GGCCACTGCC GGACTCCACC CGGCAGAAGA TCGTAGAGCT
  AGCTCACAGC GGGGCCCGGC CGTGCGACAT TTCCCGAATT CTGCAGGTGA TCCTCCCATG
  GCTGCCCTAC TCGCCGCTCC CTACCCACCC CCACCCCGCC CCCTCGTCCT GCGGCCCTCC
  R
  CTCTAAGCGT CCTCTCTTCA TTTCTTACTG TAAACGCTAC TAATTACTGA CTACACCACC
  CTCACCAACT CCATCCCCAC CACTTCCCTT ACCTTCCAGC TTTCCCCTCT CCTTCCACCA
  AGGTCCCTGT CTCTTCCAAC CTCAGTCAGT TATGTAAGAT AATTCATCTG CGTAAGAAAA
  AGAATGTGAG TGAATTAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss147168872	ENSMUSSNP2044812	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs50196184					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:105514378 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12022	CpG island 12022	1617 bp distal
Pax6	paired box 6	within coordinates
Rr858	regulatory region 858	1909 bp proximal
Rr55347	regulatory region 55347	within coordinates
Rr55348	regulatory region 55348	1222 bp proximal
Rr55349	regulatory region 55349	1822 bp proximal
Rr366621	regulatory region 366621	1180 bp downstream
Tssr588	transcription start site region 588	439 bp downstream
Tssr19262	transcription start site region 19262	1828 bp downstream
Tssr19263	transcription start site region 19263	1542 bp downstream
Tssr19264	transcription start site region 19264	1503 bp downstream
Tssr19265	transcription start site region 19265	1346 bp downstream
Tssr19266	transcription start site region 19266	1288 bp downstream
Tssr19267	transcription start site region 19267	1056 bp downstream
Tssr19268	transcription start site region 19268	1015 bp downstream