rs50197371 SNP Detail

Summary

• ID
  rs50197371
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:24011465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACCATGTC TGCCTGGATG
  CTTTCTGCCA TGATGATAAT GGACGGAACC TCTTAAACTA TATGCCAGCC ACAATTAAAT
  GTTGTCCTTT ATAAGAGTTG CCTTGGTCAT GGTGTCTCTT CACAGCAATG AAATCCAAAG
  ACACGACTCA AGCTTAACCT CTTCCTCCAG GAAGACTTCA TGGATCCTGC TGATTGGTGG
  Y
  AACCTATTGT TTCCTCTGAA CAGTTAGAGT ATGTATCTGT ACTTAGGCGG GGCCACTGGG
  CCAACAGCAT TAGCATCACT GGGAAGTCAC TGGGAATGCA ATTTCTCAGC CCCCAGTACA
  CACAAAGTAT GCATTCGAAC ACTGGGTCCC AGAAATCTAT GTTTTAACAA TATTCTCTTA
  CCATTCCAAA GCAGGCTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62131905	NES17176579	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50197371					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62131905	NES17176579	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:24011465 () rs orientation: forward

Symbol	Name	Function Class
Kcnma1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	within coordinates
Tssr127724	transcription start site region 127724	822 bp downstream