rs50197377 SNP Detail

Summary

• ID
  rs50197377
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:59039405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATTAACACA ATACCACACC ATCTCTCTGT ACCATTATGC
  CGAGGTTCCT CCATGTGCTT AAGCCAACTT TGAATGCTTC CACCCAGCAC TGGACCTGGA
  R
  CATTTTCTCT GGTCTTTCTT AGATTTCTCT CTCTTTTTTT TTTGGTCTCA CCATTTTCCC
  CTCCCGCCCA ACTCTGTCTT ACCGAATCAA AAGTAAAAGT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60415179	NES15910276	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50197377					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60415179	NES15910276	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:59039405 () rs orientation: forward

Symbol	Name	Function Class
Med12l	mediator complex subunit 12-like	within coordinates
P2ry14	purinergic receptor P2Y, G-protein coupled, 14	within coordinates
Tssr29228	transcription start site region 29228	118 bp downstream
Tssr29229	transcription start site region 29229	311 bp upstream
Tssr33381	transcription start site region 33381	1441 bp upstream
Tssr33382	transcription start site region 33382	1381 bp upstream
Tssr33383	transcription start site region 33383	1356 bp upstream
Tssr33384	transcription start site region 33384	1344 bp upstream
Tssr33385	transcription start site region 33385	1324 bp upstream
Tssr33386	transcription start site region 33386	1293 bp upstream
Tssr33387	transcription start site region 33387	1220 bp upstream
Tssr33388	transcription start site region 33388	903 bp upstream
Tssr33389	transcription start site region 33389	890 bp upstream
Tssr33390	transcription start site region 33390	843 bp upstream
Tssr33391	transcription start site region 33391	745 bp upstream