rs50197577 SNP Detail

Summary

• ID
  rs50197577
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164721995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CTGGTATGTG ATCCCGCCCA TGTTCCTCCA ATCCCGGAAT
  CGGATGCATT TTCTAGTCCG AGTTCCGCTG CTTGCGCAGA TACAGTTGTT TGTCTCTAGA
  Y
  TACGCTGCGC TTCTCCGACT TTGGTATGCG TGGGGGTCCG GAAGGCACAG GCTAAGTGAA
  AACAGTCACT TAATGGGAGC AGCAGCGAGA GTCCACAGAA C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148232726	ENSMUSSNP2073359	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50197577					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164721995 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930445K14Rik	RIKEN cDNA 4930445K14 gene			within coordinates
Cpgi12676	CpG island 12676			within coordinates
Gm75548	predicted gene, 75548			276 bp upstream
Pcif1	phosphorylated CTD interacting factor 1			Intron
				mRNA-UTR
Rr397480	regulatory region 397480			564 bp downstream
Rr397481	regulatory region 397481			within coordinates
Rr569749	regulatory region 569749			1456 bp distal
Rr569750	regulatory region 569750			1391 bp distal
Rr569751	regulatory region 569751			708 bp distal
Rr569752	regulatory region 569752			287 bp distal
Rr569753	regulatory region 569753			672 bp distal
Rr569754	regulatory region 569754			within coordinates
Tssr21683	transcription start site region 21683			677 bp downstream
Tssr21684	transcription start site region 21684			36 bp downstream
Tssr21685	transcription start site region 21685			14 bp downstream
Tssr27592	transcription start site region 27592			271 bp upstream