rs50198260 SNP Detail

Summary

• ID
  rs50198260
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:39835518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAACTTCCC CTGATCACAT
  TTACCAAGTA ACAGAGAAAT GTTCACAGTT TACACAGGGA TTGGCGAAAA GCACTTCCAA
  TGTAACATTT TGCTCTATGA AAATGTCTGA AGTGCAGCAG GATTGATTTC AATAGAATCG
  TGGGCAGAGT AAGACACATT CGGGCTCTAC CATTAAAACA CCCGTGTGAC CAAGAAAAAG
  Y
  CGCTTTCCTC TTGGGCCTAT TTGTAAAACC AAGTGGATGG CCACCCAGAA ATGGAAGTGC
  TAGAAAAAAA ATCAGTTTAT TGTAGAGTTA GTAATAGTTC AGAGTGCGGT GGCTACAGAC
  CCAGGCAATG CTAGGAAAGT TTGCTGCAGT TAGAAAACAG TGCGATTAAT TTCGAACTGG
  ACAGCAACCC TCAGTGATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss61271499	NES16888096	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs50198260					SNP	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61271499	NES16888096	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:39835518 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1451	CpG island 1451	165 bp proximal
Mfsd4b3-ps	major facilitator superfamily domain containing 4B3, pseudogene	within coordinates
Mfsd4b5	major facilitator superfamily domain containing 4B5	within coordinates
Rr214610	regulatory region 214610	918 bp distal
Rr224689	regulatory region 224689	within coordinates
Rr401837	regulatory region 401837	648 bp upstream
Tssr97348	transcription start site region 97348	622 bp downstream
Tssr97349	transcription start site region 97349	650 bp downstream
Tssr97350	transcription start site region 97350	673 bp downstream
Tssr97351	transcription start site region 97351	721 bp downstream