rs50198740 SNP Detail

Summary

• ID
  rs50198740
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:59517301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGCAACT GTGCAGAGGT
  GTGAATTGGC AGGTGTGTTT GGGGCCCTGC CAGGAACTGG CATGAGTAGG ACAGAGACCA
  GGAGATGAAA AAGATGAGTC TTGAAAGGGA AGTGAGACCT GAACGGATAC AGGATGTGGA
  TTTCCTCCGT GAGTCCTTCA GTGTTAGGCC AGAGCCTGAT GCCCTCAGGT TCACGGTTCA
  M
  GGGTTCCTCT AGTGTTGTGC CAAAAAGGAA CTGAGGGGGG CACCTTTACT TTATCCACAG
  CACTTAGTAG GTACCCTGAC ACACAGTAGG TATTTGCTAG TGGCTGAAAG GATGGTTTCA
  TGGTTCAGAA GCTCTCTGCA GGAATCCAGT CTTGCACTGA GTTGGGGGTG GGGCGTGAGG
  GGCGTGGGTG GGCGTGTTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147986859	ENSMUSSNP3675661	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50198740					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:59517301 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7127	CpG island 7127	1987 bp proximal
Gm56697	predicted gene, 56697	238 bp downstream
Rr502885	regulatory region 502885	1844 bp distal
Rr502886	regulatory region 502886	within coordinates
Rr502887	regulatory region 502887	549 bp proximal
Tssr134443	transcription start site region 134443	902 bp downstream